Program
| Monday the 23rd of June 2025 | |
|---|---|
| 09:00 – 11:30 | REGISTRATION |
| 09:00 – 11:00 | Coffee Station |
| 11:30 – 13:00 | Institutional Greetings and Opening Remarks |
| 13:00 – 14:00 | LUNCH |
| 14:00 – 15:45 | Practical class: Bash for UNIX-like operating systems |
| 15:45 – 16:15 | Coffee Break |
| 16:15 – 18:00 | Practical class: Sequence quality check and trimming |
| 18:30 – 22:00 | WELCOME RECEPTION |
| Tuesday the 24th of June 2025 | |
|---|---|
| 09:00 – 10:45 | Alessandra Villani - CNR-ISPA, Bari, Italy “Genomic quality matters: insights from the Fusarium genus” |
| 10:45 – 11:15 | Coffee Break |
| 11:15 – 13:00 | Michael Seidl - Utrecht University, the Netherlands “Evolutionary bioinformatics to unlock genome evolution and function in filamentous plant pathogens?” |
| 13:00 – 14:00 | LUNCH |
| 14:00 – 15:45 | Practical class: Assembly of short and long reads |
| 15:45 – 16:15 | Coffee Break |
| 16:15 – 18:00 | Practical class: Assembly comparison, coverage distribution and contamination check |
| Wednesday the 25th of June 2025 | |
|---|---|
| 09:00 – 10:45 | Daniel Croll - Institute of Biology, University of Neuchâtel, Switzerland “Evolution in action - using population genomics to unravel pathogen adaptation” |
| 10:45 – 11:15 | Coffee Break |
| 11:15 – 13:00 | Megan McDonald - University of Birmingham, UK “Jumping Genes and Pathogenic Schemes: Identifying, characterising and tracking transposons in fungal plant pathogens” |
| 13:00 – 14:00 | LUNCH |
| 14:00 – 15:45 | Practical class: Gene prediction softwares and pipelines I |
| 15:45 – 16:15 | Coffee Break |
| 16:15 – 18:00 | Practical class: Gene prediction softwares and pipelines I |
| Thursday the 26th of June 2025 | |
|---|---|
| 09:00 – 10:45 | Luigi Faino - Sapienza University of Rome, Italy “Genome annotation and effector identification in genomic - a genomic study” |
| 10:45 – 11:15 | Coffee Break |
| 11:15 – 13:00 | Lea Atanasova - BOKU University Vienna, Austria “Genomic Insights into the Opportunistic Genus Trichoderma” |
| 13:00 – 14:00 | LUNCH |
| 14:00 – 15:45 | Practical class: Functional annotation |
| 15:45 – 16:15 | Coffee Break |
| 16:15 – 18:00 | Practical class: Data share - make your data accessible |
| 20:00 – 24:00 | SOCIAL DINNER |
| Friday the 27th of June 2025 | |
|---|---|
| 09:00 – 10:45 | Riccardo Baroncelli – University of Bologna, Italy “Comparative genomics for the identification of pathogenicity related genes” |
| 10:45 – 11:15 | Coffee Break |
| 11:15 – 13:00 | Matteo Schiavinato - Sequentia Biotech, Barcelona, Spain “Develop, debug, and deploy: from bash commands to a cloud-based genome assembly pipeline” |
| 13:00 – 14:00 | LUNCH |
| 14:00 – 15:45 | Practical class: RNAseq and expression profiles |
| 15:45 – 16:15 | Coffee Break |
| 16:15 – 18:00 | Practical class: R and results visualization |
